Thursday, October 28, 2010

Chapters 7 and 17

These two chapters are rather technical, but I encourage you to think beyond the details and formulas and try to think of the biological implications and the bigger picture. Chapter 17, on parent-offspring regression, is a bit out-dated, as methods to estimate quantitative genetic parameters have been developed a lot since 1998, particularly the so-called "Animal Model".

Chapter 7, however, contains some general information that has important biological and evolutionary implications also today. I would particularly like to highlight the crucial evolutionary role of assortative mating, an underestimated evolutionary force. I say "underestimated", because assortative mating might be perceived as uninteresting and unimportant, since it only changes genotype frequences, not allele frequencies. Assortative mating (=positive correlation between the characters of mates), increases the frequency of homozygotes in a population, and hence "flattens" the trait distribution and increases the additive genetic variance. This is because extreme individuals at the tails of the trait distributions (homozygotes) increase at the expense of individuals close to the mean (heterozygotes); a higher frequency of homozygotes are produced when parents mate assortatively.

How can then assortative mating affect the additive genetic variance and the response to selection? In chapter 7, consider Figs. 7.7 (theory) and Example 4 (empirical results from an experiment on assortative mating experiment on Drosophila).

In Fig. 7 it can be seen that with a relative moderate phenotypic correlation between the traits of parents (r = 0.5), the additive genetic variance increases and becomes twice the amount as under the situation of random mating (r = 0)! This is a huge amount, and it happens without any particular molecular mechanism or changed gene experession etc., it simply an effect of the fact that "likes mates with like", which results in a higher frequency of homozygotes in the population.

Note that, interestingly, with disassortative mating (r < 0),  the additive genetic variance does not decrease as much, but instead hovers around 90 % of the expected variance under random mating (Fig. 7.7). These theoretical expectations are largely confirmed in the experiment presented in Example 4. 



Discuss the evolutionary implications of assortative mating as a means of increasing the additive genetic variance without affecting allele frequencies! Can you think of any implications in conservation biology, for instance, in terms of population "rescue" of small populations threatened by genetic drift?
 

Sunday, October 17, 2010

First meeting: Chapters 1 and 4 in "Lynch & Walsh"

Our first meeting with the GENECO course will take place in the Ecology Building (Lund University) on Thursday, October 21 2010 (10.00 - 12.00). During this meeting, we will discuss chapter 1 (p. 3-17) and chapter 4 (p. 51-79). After this meeting, I expect the participants to be able to define and explain these terms:

- Homozygous effects
- Dominance coefficient
- Additive effect
- Average excess
- Breeding value
- Additive genetic variance

In particular, you should be able to explain how the link between breeding values and additive genetic variance, and how these terms are related to each other.

I also want you to discuss, in particular, the second paragraph on p. 17, about the relationship between molecular genetics and quantitative genetics. How do Lynch & Walsh counter the frequent criticism from molecular geneticists that quantitative genetics is "phenomenological", "missing the boat" or "cheating"? To what extent is it justified to ignore the details, studied by molecular geneticists, and focus on phenotypes? Do we actually need any information about mechanisms at all, to quantify and study patterns of resemblance between relatives? Would quantitative genetics work independent of the genetic material (i. e. whether it is DNA, RNA or any other self-replicating hereditary substance)? Why? Why not?

I recommend you to register your name at "Blogger" to participate in the discussion and comment on the posts below. Alternatively, you might sign with your name, but without being registered at Blogger. In any case, use this forum as a means to put forward your questions during the course.